BtaEX6026619 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30563022-30574583:+
Coord C1 exon
chr4:30563022-30563138
Coord A exon
chr4:30569443-30569581
Coord C2 exon
chr4:30574491-30574583
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATTTCATATTTACTTTGTAGACC
3' ss Score
8.11
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATTTGTATTTCTTGGCGAAGCTATCATACTGAAGCCATCAGTCGGAATATTTATCACTATGAACCCAGGATATGCTGGTCGAACTGAATTACCAGAAAATCTCAAAGCTCTTTTCAG
Seq A exon
ACCCTGTGCCATGGTGGCCCCAGACATCGAGCTAATCTGTGAAATCCTGTTAGTTGCTGAGGGTTTTGTGGATGCACGCTCATTAGCCTGCAAATTTATCACATTGTACACACTCTGCCAGGAGCTCCTGTCCAAGCAG
Seq C2 exon
GATCATTATGATTGGGGACTCCGTGCTATTAAATCTGTCTTGGTTGTAGCTGGCTCCCTGAAACGAGGAGATAAAAATAGACCTGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'46-48,'46-46,47-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.9=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=77.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCTATCATACTGAAGCCA
R:
TCAGGTCTATTTTTATCTCCTCGTT
Band lengths:
188-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]