RnoEX6030077 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145953279-145968180:-
Coord C1 exon
chr6:145968064-145968180
Coord A exon
chr6:145962010-145962148
Coord C2 exon
chr6:145953279-145953371
Length
139 bp
Sequences
Splice sites
3' ss Seq
AGCTTATATTTATAATGTAGACC
3' ss Score
4.15
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATTCGTATTTCTTGGGGAGACCATCCCGCTGAAGCCATCGGTTGGAATATTCATCACTCTGAACCCAGGATATGCTGGTCGAACCGAATTACCAGAAAACCTCAAAGCTCTGTTCAG
Seq A exon
ACCCTGTGCCATGGTGGCCCCTGATACTGAGCTGATCTGTGAAATCATGTTGGTGGCAGAAGGGTTTGTGGATGCGCGGTCATTGGCCCGGAAGTTCATTTCCTTGTACACGCTCTGTGACGAACTGCTGTCCAAGCAG
Seq C2 exon
GATCATTATGACTGGGGACTTCGTGCCATCAAGTCTGTCTTGGTTGTAGCCGGCTCCCTGAAACGAGGAGATAAAAATAGACCCGAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'48-50,'48-48,50-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.9=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=77.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCATCCCGCTGAAGC
R:
TGGTCTTCGGGTCTATTTTTATCTCC
Band lengths:
194-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]