MmuEX6083425 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119285709-119295682:-
Coord C1 exon
chr12:119295566-119295682
Coord A exon
chr12:119289101-119289239
Coord C2 exon
chr12:119285709-119285801
Length
139 bp
Sequences
Splice sites
3' ss Seq
AGCTCATATTTATACTGTAGACC
3' ss Score
5.45
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATTTGTATTTCTTGGAGAGACTATCCCGCTGAAACCCTCGGTTGGAATATTTATTACTCTGAACCCAGGATATGCCGGTCGAACCGAATTACCAGAAAACCTCAAAGCTCTGTTCAG
Seq A exon
ACCCTGTGCCATGGTGGCCCCGGACACTGAGCTGATCTGTGAAATCATGTTGGTGGCGGAAGGGTTTGTGGATGCACGCTCGTTGGCCCGGAAGTTCATTTCCTTGTACACGCTCTGTGAGGAGCTGCTGTCCAAGCAG
Seq C2 exon
GATCACTATGACTGGGGACTTCGTGCTATTAAGTCTGTCTTGGTGGTAGCTGGCTCACTGAAACGAGGAGATAAAAATAGACCCGAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'35-36,'35-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.9=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=77.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTTGGAGAGACTATCCCGCT
R:
TGATCTTCGGGTCTATTTTTATCTCC
Band lengths:
202-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: