BtaEX6026624 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30524619-30552094:+
Coord C1 exon
chr4:30524619-30524768
Coord A exon
chr4:30527885-30528118
Coord C2 exon
chr4:30551963-30552094
Length
234 bp
Sequences
Splice sites
3' ss Seq
ACATTTGTTTGCTTTAAAAGGTG
3' ss Score
8.33
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GTTACACGCCACCTTTCCAAACTCTTCGACAGCATTGCAGATCTGCAGTTTGAAGATGATCAGGATGTCTCTGCACACAGGGCGGCTGGAATGTATAGCAAAGACAAGGAGTACGTCCCATTCCCAGCTGCGTGTGAATGCATAGGCCAT
Seq A exon
GTGGAAACCTGGCTCCTGCAGCTGGAGCGGACCATGCAAGAGACAGTGCGTCATTCCATCACAGAAGCCATCGCGGTCTATGAAGACAAACCCAGGGAACTGTGGATTTTTGATTTCCCAGCTCAAGTTGCACTAACTAGCTCACAAATCTGGTGGACTACAGATGTAGGAATAGCCTTCAGTAGGCTAGAGGAAGGCTACGAAACGGCCCTAAAGGATTTCCATAAAAAACAG
Seq C2 exon
ATTTCTCAGTTGAATACACTGATTGCACTTCTGCTGGGAGAACTTCTACCTGGAGACAGGCAGAAGATCATGACAATTTGTACCATCGATGTCCATGCCAGAGACGTGGTGGCAAAACTTATTTCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'40-40,'40-37,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(57.6=100)
A:
PF083938=DHC_N2=PD(31.8=34.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGCCACCTTTCCAAACTC
R:
CTGAGAAATAAGTTTTGCCACCACG
Band lengths:
276-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]