HsaEX0020115 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21695450-21721302:+
Coord C1 exon
chr7:21695450-21695599
Coord A exon
chr7:21698416-21698649
Coord C2 exon
chr7:21721164-21721302
Length
234 bp
Sequences
Splice sites
3' ss Seq
ATTTCAACTTGCTTCCAAAGGTG
3' ss Score
8.02
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTAACATGTCACCTTGCCAAACTTTTCGACAGCATTGCAGATCTGCAGTTTGAAGACAATCAGGATGTTTCTGCACACAGGGCAGTTGGAATGTACAGCAAAGAAAAGGAGTATGTCCCATTCCAAGCCGAGTGTGAATGTGTGGGCCAT
Seq A exon
GTGGAAACATGGCTTCTGCAACTTGAACAGACTATGCAAGAAACGGTGCGTCATTCTATAACAGAAGCCATAGTGGCCTACGAGGAAAAACCTAGGGAACTGTGGATTTTTGATTTCCCAGCTCAGGTTGCACTAACCAGCTCACAAATATGGTGGACCACAGATGTAGGAATAGCCTTCAGTAGACTGGAAGAAGGCTACGAAACAGCCCTGAAGGATTTCCATAAAAAACAG
Seq C2 exon
ATTTCTCAGCTGAATACACTGATTACACTTTTGCTGGGAGAACTTCCACCTGGAGACAGACAGAAGATCATGACAATTTGTACCATAGATGTCCATGCCAGAGACGTGGTGGCAAAACTTATTTCTCAGAAGGCAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'32-32,'32-31,33-32
Average complexity
C1
Mappability confidence:
62%=100=25%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(11.7=100)
A:
PF083938=DHC_N2=PD(6.5=34.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGTCACCTTGCCAAACT
R:
TTGCCTTCTGAGAAATAAGTTTTGCC
Band lengths:
284-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)