HsaEX0020115 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21655832-21681677:+
Coord C1 exon
chr7:21655832-21655981
Coord A exon
chr7:21658798-21659031
Coord C2 exon
chr7:21681546-21681677
Length
234 bp
Sequences
Splice sites
3' ss Seq
ATTTCAACTTGCTTCCAAAGGTG
3' ss Score
8.02
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
GTAACATGTCACCTTGCCAAACTTTTCGACAGCATTGCAGATCTGCAGTTTGAAGACAATCAGGATGTTTCTGCACACAGGGCAGTTGGAATGTACAGCAAAGAAAAGGAGTATGTCCCATTCCAAGCCGAGTGTGAATGTGTGGGCCAT
Seq A exon
GTGGAAACATGGCTTCTGCAACTTGAACAGACTATGCAAGAAACGGTGCGTCATTCTATAACAGAAGCCATAGTGGCCTACGAGGAAAAACCTAGGGAACTGTGGATTTTTGATTTCCCAGCTCAGGTTGCACTAACCAGCTCACAAATATGGTGGACCACAGATGTAGGAATAGCCTTCAGTAGACTGGAAGAAGGCTACGAAACAGCCCTGAAGGATTTCCATAAAAAACAG
Seq C2 exon
ATTTCTCAGCTGAATACACTGATTACACTTTTGCTGGGAGAACTTCCACCTGGAGACAGACAGAAGATCATGACAATTTGTACCATAGATGTCCATGCCAGAGACGTGGTGGCAAAACTTATTTCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'51-48,'51-47,52-48
Average complexity
C1
Mappability confidence:
75%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(11.7=100)
A:
PF083938=DHC_N2=PD(6.5=34.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGTCACCTTGCCAAACT
R:
TGAGAAATAAGTTTTGCCACCACG
Band lengths:
276-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development