BtaEX6026633 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30481893-30487135:+
Coord C1 exon
chr4:30481893-30482062
Coord A exon
chr4:30482294-30482516
Coord C2 exon
chr4:30487019-30487135
Length
223 bp
Sequences
Splice sites
3' ss Seq
GTACATACATGTCTTTATAGCCT
3' ss Score
5
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATTGACATTTATGAGGCCCTGTATGTTCAGATGAGCAAGTTTGATGACTTCAGGGTGTTTGATAGTTGGTTCAAGGTGGACATGAAGCCTTTTAAAGTGAGCTTGCTGAACATCATCAGGAAATGGAGCTGGATGTTTCAGGAGCATCTTTTGAGATTTGTCATTGACAG
Seq A exon
CCTGAATGAGCTACAAGAATTTATAAAGGAGACAGATGCTGGACTTCAGAGAGAATTAAGTGAAGGCGATCATGATGGTTTAGTTGACATTATGGAGCATCTTCTGGCTGTAAGAAGCCGACAGAGAGCTACTGATGAACTCTTTGAACCACTGAAAGAAACCATCACACTCTTGGAAATGTATGGCCAGAAGATGCCTGAGCACGTCTATACTCAGCTAAAG
Seq C2 exon
GAATTACCTGAAAGATGGGAAACTACCAAAAAGATTGCAGCAGCTGTCAGACACGAGGTCTCACCTCTCCAAAACGCAGAAGTCTCCCTCATAAGGAAAGCGTGTGTTTTGTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'24-25,'24-23,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACATTTATGAGGCCCTGT
R:
TCAAACAAAACACACGCTTTCCT
Band lengths:
285-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]