RnoEX6030065 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146027860-146041186:-
Coord C1 exon
chr6:146041017-146041186
Coord A exon
chr6:146040045-146040267
Coord C2 exon
chr6:146027860-146027976
Length
223 bp
Sequences
Splice sites
3' ss Seq
TGTCTATGCATTCATTACAGTCT
3' ss Score
6.82
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCGACATTTATGAAGCTTTGTATGTTCAGATGAGCAAGTTTGATGACTTCCGAGTGTTTAACAGTTGGTTCAAGATAGACATGAGACCTTTCAAGTTGAGCATGCTCAACGTGATCAAGAAGTGGAGCTGGATGTTTCAAGAGCATCTGCTAAGATTTGTCGTCGACAG
Seq A exon
TCTGAGTGAGCTGCAAGGATTCATCAAGCAGACAAACGCAGGACTTCAGAGACAGCCACATGAGGGTGATCACGATGGCTTAGTTGACATCATGGGTCACCTCCTGGCTGTAAGAAGCCGACAGAGAGCTACTGATGAGCTCTTTGAACCTCTGAAGGAAACCATCATGCTTCTGGAAAGCTATGGCCAGAAGATGCCTGAGCAAGTCTATGCCCAGCTGGAG
Seq C2 exon
GAATTACCTGAAAGATGGGAAACCACCAAGAAGATCGCAGCCGTGGTCAGGCATGAGGTCTCGCCACTCCAAAACGCAGAGGTCACTCTTCTAAGGAAAAAATGTATTTTGTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'17-18,'17-16,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACATTTATGAAGCTTTGTATGT
R:
GTGACCTCTGCGTTTTGGAGT
Band lengths:
255-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]