MmuEX6083410 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119359133-119365399:-
Coord C1 exon
chr12:119365230-119365399
Coord A exon
chr12:119364212-119364434
Coord C2 exon
chr12:119359133-119359249
Length
223 bp
Sequences
Splice sites
3' ss Seq
CGTGTACATTTTCATTACAGTCT
3' ss Score
6.31
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTGACATTTACGAGGCTTTGTATATTCAGATGAGCAAGTTTGACGACTTCCGAGTATTTAACAGTTGGTTCAAGGTAGACATGAGACCTTTTAAGTTGAGCTTGCTCAACGTGATCAAGAAGTGGAGTTGGATGTTTCAAGAGCATCTGCTAAGATTTGTCGTCGACAG
Seq A exon
TCTGAGTGAGCTGCAAGGATTCATCAAGCAGACAAATGCAGGACTTCAGAGACAGCTGTGTGAGGGCGATCATGATGGCTTAGTTGACATCATGGGTCACCTTCTGGCTGTAAGAAGCCGACAGAGAGCTACTGATGAGCTCTTTGAACCTCTGAAAGAAACAATCATGCTTCTGGAAAGCTATGGGCAGAAAATGCCCGAGCAAGTCTATGCCCAGCTGGAG
Seq C2 exon
GAATTACCTGAAAGATGGGAAACCACCAAGAAGATTGCAGCCATGGTCAGACATGAGGTCTCGCCACTCCAAAACGCAGAGGTTACTCTTATACGGAAAAAATGTATTTTGTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTTACGAGGCTTTGTATATTCA
R:
AGTAACCTCTGCGTTTTGGAGTG
Band lengths:
254-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: