BtaEX6026638 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30467081-30473362:+
Coord C1 exon
chr4:30467081-30467276
Coord A exon
chr4:30472714-30472818
Coord C2 exon
chr4:30472970-30473362
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTTTCTTTTAATAGCTA
3' ss Score
8.43
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ATTCTTGGAAAGTCCTGATGATACCTTGGTTTATCAGAAGTATGTTGAGATGACAACTTTGCTGAACCAATTTGAAGATCATATCTATAATGAATGGAAAAGCAATGTGAATGAAATCTGTGAATTTAATTTGAATCAGCCCTTAGTTAAATTCAGTGCCACAAGTGGTCTTCTCAGTGTCAACTTTGACCCAAAG
Seq A exon
CTAGTGGCCGTATTAAGAGAAGTGAAATACCTTTTGATGTTGAAGAAATCAGACATACCAGATTCAGCCTTCACCATCTTCAAAAAAAGAAACACTCTCTTAAAG
Seq C2 exon
TACATTGGAAATCTTGAACTTCTTGTGCACGGATATAATAAGCTGAAACAGACTCTTCTGGAAGTTGAATACCCCCTGATTGAGGACGAGCTGAGGACGGTGGATGAGGAACTGCAGGCAGCCGCCACATCGCTGACATGGCAGGATGACTGCTGGGAGGATATCAAGAGGGTAAGGATGGCCACCTCAGAGCTGGAGCGCAGAGTGGAGCGTGCGCAGAATAACGTCAGAGTGATCCAGCAGACCCTGCGGGCTTGGGCCGAGTGCCCGCTCCTTCCCAGGAGAGAACACAGGCGGGAGACCACCATGACTTGGGAGGACAAGAGTGAATTATTTACGAAAAAATACAAGCGAATCCGGGAAGACGGCTGCAAGATACACAACTTGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.2=100)
A:
PF083857=DHC_N1=FE(5.9=100)
C2:
PF083857=DHC_N1=PD(9.5=42.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGACAACTTTGCTGAACCA
R:
TCCTCAGCTCGTCCTCAATCA
Band lengths:
248-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]