MmuEX6083405 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119369192-119379240:-
Coord C1 exon
chr12:119379045-119379240
Coord A exon
chr12:119369747-119369851
Coord C2 exon
chr12:119369192-119369584
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTTACTATTCTTGGAATAGCTT
3' ss Score
4.48
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATTTCCAGACAGTCCTGATGAGGCTGCAGTCTGTCAGAAGTATGCTGAAATGACCACTTTGCTGGATCAATTTGAAAGTCACATCTATAGTGAATGGAGAAGAAATGTGGACGAAACCTGTGAATTTAATCTGAATCAACCCTTGGTTAAATTCAGTCCCATAAACGGCCTTCTTAGTGTCAACTTTGACCCAAAG
Seq A exon
CTTGTGGCGGTGCTGAGAGAAGTCAAATACCTTTTGATGCTGAAGAAGTCCGACATACCAGATTCAGCTTTAGGCATTTTCCAGAAAAGGAACATTATTTTAAAG
Seq C2 exon
TACATTGGGAATCTTGAGCTCCTTGTACAAGGCTACAATAAGCTGAAACAGACCCTTCTGGAAGTGGAATACCCTCTCATTGAGGATGAGCTTGGAGCCATTGATGAGCAGCTCAGGGTGGCTGCAACCTGGCTGACATGGCAAGATGACTTCTGGGTCTACATGGAGAGGGTGCAGGTGGCCACTGCTGAGCTAGAGTGCAGAGTGTCACAGACTCAGAGCAACATGCTAACAATCCAGCAAACCATGCAGGCCTGGGCTGAGTGGCCACTGCTGCCCCGGAGGGAGACCAGAAGAGAGGCTGCCTTGACCTTGGACGACAAGGGGGATCTGTTTGCAAAAAAGTACAAGCTGATCCGAGAAGATGGTTGCAAGATACACAACTTGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.2=100)
A:
PF083857=DHC_N1=FE(5.9=100)
C2:
PF083857=DHC_N1=PD(9.5=42.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCCCATAAACGGCCTTC
R:
TCTGCACTCTAGCTCAGCAGT
Band lengths:
248-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: