RnoEX0028410 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146045042-146048816:-
Coord C1 exon
chr6:146048621-146048816
Coord A exon
chr6:146045594-146045698
Coord C2 exon
chr6:146045042-146045434
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTTACTATTCTTGAAATAGCTT
3' ss Score
5.18
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATTTCCAGACAGTCCTGATGAGGCTGCAGTCTGTCAGAAGTATGCTGAAATGACCACTTTGCTGGATCAATTTGAAAGTCGCATCTATAGTGAATGGAGAAGAAATGTGGACAAAACCTGTGAATTTAATCTGAATCAGCCCTTGGTTAAATTCAGTCCCATAAACGGCCTTCTTAGTGTCAACTTTGACCCAAAG
Seq A exon
CTTGTGGCGGTACTGAGAGAAGTCAAATACCTTTTGATGCTGAAGAAGTCCAACATACCAGATTCGGCTTTAGGCATTTTCCAGAAAAAGAACATTATTTTAAAG
Seq C2 exon
CACATTGGGAATCTCGAGCTCCTGGTACAAGGATACAATAAGCTGAAACAGACCCTTCTGGAAGTTGAATACCCTCTCATTGAGAAAGAGCTTGGAGCCATTGATGAGCAGCTCAGGGTGGCTGCAACCTGGTTGACATGGCAAGATGACTTCTGGGTCTACATGGAGAAGGTGCAGGTGGCCACTGCCGAGCTAGAGCGCAGAGTGTCACAGACTCAGAGCAATGTGCAAACAATCCAGCAAACCATGCAGGCCTGGGCTGAGTGGCCACTGCTGCCCCGGAGGGAGACCAGAAGAGAGGCTGCCTTAACCTTGGATGACAAGGGGGATCTGTTTGCTAAGAAATACAAGCTGATCCGAGAAGATGGCTACAAGATACACAACCTGGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.2=100)
A:
PF083857=DHC_N1=FE(5.9=100)
C2:
PF083857=DHC_N1=PD(9.5=42.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCCCATAAACGGCCTTC
R:
TCTGTGACACTCTGCGCTCTA
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]