BtaEX6028082 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032288 | GCK
Description
Bos taurus glucokinase (hexokinase 4) (GCK), mRNA. [Source:RefSeq mRNA;Acc:NM_001102302]
Coordinates
chr4:77820949-77848492:+
Coord C1 exon
chr4:77820949-77821392
Coord A exon
chr4:77847630-77847792
Coord C2 exon
chr4:77848338-77848492
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTCCACCCCTCCCTGTGCAGGCG
3' ss Score
9.82
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
CTCAAAGGCTGTCCCCCAGACACCGGAGGAAGGAGGACCTTTTCTGCTGAATCTGTTTAGAGAGCACCACGCCGTCACAGCTCAGCACAGCCCGAAGAGAAAGCTGACCAGCCCTGGGAGCCCAGCAATGGTCCTCCCCCGACCATACCTAGCCTGACAAGGCCTCAGTGGGGAAAGGTCCTGACTATGACCCAGGAGAGAAAGCTGGAGAACAATGAAAAGGAGGAAACTCTGTGATTGAACATCAAGCCAGAAACCAGCCAGAAGGTGGACCATACTCAACCAGATACCTGGGCCAGCCGTTACCCTTGGTTAGGAGAAGGCCGGGGATATTTCACCTTGGAAGCCTGTCGAGGAACGCTGAGGGGTCCCAGCTCCTCTGGGCTGGCTGCGGTACAAATGCTGGATGACAGAGCCAGGATGGAGATCTCCAAGAAGGAAAAG
Seq A exon
GCGGAACAGATCCTGGCAGAGTTCCAGCTGCAGGAGGAGGACTTGAAGAAGGTGATGAGGCGGATGCAGAAGGAGATGGACCGAGGCCTGAGGCTGGAGACCCACAAGGAGGCCAGTGTGAAGATGCTGCCCACCTATGTGCGCTCCACCCCAGAGGGCTCAG
Seq C2 exon
AAGTTGGGGACTTCCTCTCCCTGGACCTGGGTGGCACCAACTTCCGGGTGATGCTGGTGAAGGTGGGAGAAGGCGAGGCGGGACAGTGGAGTGTGAAGACCACGCACCAGATGTACTCCATCCCCGAGGATGCCATGACGGGTACTGCTGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032288-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.164 C2=0.019
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PU(1.9=26.7)
A:
PF0034916=Hexokinase_1=FE(26.1=100)
C2:
PF0034916=Hexokinase_1=FE(24.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCCGGGGATATTTCACC
R:
AGTACATCTGGTGCGTGGTCT
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]