MmuEX6083799 @ mm9
Exon Skipping
Gene
ENSMUSG00000041798 | Gck
Description
glucokinase [Source:MGI Symbol;Acc:MGI:1270854]
Coordinates
chr11:5810281-5815127:-
Coord C1 exon
chr11:5814970-5815127
Coord A exon
chr11:5810865-5811027
Coord C2 exon
chr11:5810281-5810435
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCCTCCCCGAATAGGTA
3' ss Score
11.45
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTCCTTGGCTGCCTGTCTTTTGCAACACTCAGCCAGACAGTCCTCACCCACAGCAGGTGGCCTCGGGAGTCAGGAACATCTCTACTTCCCCAACGACCCCTGCTTATCCTCAGATGGCTGTGGATACTACAAGGAGGGGAGCCCAGTCGTTGACTCTG
Seq A exon
GTAGAGCAGATCCTGGCAGAGTTCCAGCTGCAGGAGGAAGACCTGAAGAAGGTGATGAGCCGGATGCAGAAGGAGATGGACCGTGGCCTGAAGCTGGAGACCCATCAGGAGGCCAGTGTAAAGATGTTGCCCACCTACGTGCGTTCCACCCCAGAAGGCTCAG
Seq C2 exon
AAGTTGGAGACTTTCTCTCCTTAGACCTGGGAGGAACCAACTTCAGGGTGATGCTGGTGAAAGTGGGGGAGGGGGAGGCAGGACAGTGGAGCGTGAAGACGAAACACCAGATGTATTCCATCCCCGAGGACGCCATGACGGGCACTGCGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041798-'1-3,'1-2,2-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.212 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PU(2.4=33.3)
A:
PF0034916=Hexokinase_1=FE(26.0=100)
C2:
PF0034916=Hexokinase_1=FE(24.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTCAGCCAGACAGTCCT
R:
GTGTTTCGTCTTCACGCTCCA
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: