MmuINT0068134 @ mm9
Intron Retention
Gene
ENSMUSG00000041798 | Gck
Description
glucokinase [Source:MGI Symbol;Acc:MGI:1270854]
Coordinates
chr11:5810281-5811027:-
Coord C1 exon
chr11:5810865-5811027
Coord A exon
chr11:5810436-5810864
Coord C2 exon
chr11:5810281-5810435
Length
429 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
ATCTCTCCCTTTGCCTGCAGAAG
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTAGAGCAGATCCTGGCAGAGTTCCAGCTGCAGGAGGAAGACCTGAAGAAGGTGATGAGCCGGATGCAGAAGGAGATGGACCGTGGCCTGAAGCTGGAGACCCATCAGGAGGCCAGTGTAAAGATGTTGCCCACCTACGTGCGTTCCACCCCAGAAGGCTCAG
Seq A exon
GTACCTCAGGGCTCATCTGTCCCTAGACAGGACCCTCTAGGCAAACGATGACATCCCCGAATCACTGGACCTGCGTTTGTCCAGCTACCTGAAGCCCTGGGGTGCTCAGGTCCAGCCTAAAGATATCAGTCCCTAGGAGAATTGGCCTTTTTGTCTCTGAGGTCACCTGGGGAAGCTCCTCCTCTTCTAGAGTCTGGTCTGTCACTCTAGGTCTTGTGTAGCTCCCTAGGTTCTGGCTGCCTCTACCTAAGGCAGGGTTTTCCCGCTGGTGCTCCTACTTCACCTTTGACCCTTCCACAGGTTGCTCTAGCATTACCCCACCCCCAGTGTCTAGGCTAGCATCCCCTCAGCCACGTTGTCTGGGCTCCCCAGACCTAGTCCACCCGTCAGGTGGGCCACGAGACTGAACATCTCTCCCTTTGCCTGCAG
Seq C2 exon
AAGTTGGAGACTTTCTCTCCTTAGACCTGGGAGGAACCAACTTCAGGGTGATGCTGGTGAAAGTGGGGGAGGGGGAGGCAGGACAGTGGAGCGTGAAGACGAAACACCAGATGTATTCCATCCCCGAGGACGCCATGACGGGCACTGCGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041798-Gck:NM_010292:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(26.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGCAGATCCTGGCAGAGT
R:
CATCTCCGCAGTGCCCGT
Band lengths:
318-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: