RnoINT0064441 @ rn6
Intron Retention
Gene
ENSRNOG00000061527 | Gck
Description
glucokinase [Source:RGD Symbol;Acc:2670]
Coordinates
chr14:86158838-86159558:-
Coord C1 exon
chr14:86159448-86159558
Coord A exon
chr14:86158993-86159447
Coord C2 exon
chr14:86158838-86158992
Length
455 bp
Sequences
Splice sites
5' ss Seq
GAGGCCAGT
5' ss Score
-0.05
3' ss Seq
ACCTCTCCCTCTGCCTGCAGAAG
3' ss Score
11.84
Exon sequences
Seq C1 exon
GTCGAGCAGATCCTGGCAGAGTTCCAGCTGCAGGAGGAAGACCTGAAGAAGGTGATGAGCCGGATGCAGAAGGAGATGGACCGTGGCCTGAGGCTGGAGACCCACGAGGAG
Seq A exon
GCCAGTGTAAAGATGTTACCCACCTACGTGCGTTCCACCCCAGAAGGCTCAGGTACCGCAGGGTTCATCTGTCCCTAGCCGGGACCTTCTAGGCAAATGATATCCCCAAATCACTGGACCAGTGTTTGTCCAGCTGCCTGAAGCCCTCGGGTGCTCAGGCCCAGCCTAGACCTATCAATTCTTAGGAGAACTGGCTTTTTTTTTTTGCCTCTAAGCTCACTTGGGGAATCTCCTCCTTATCCTGAGTCTGGTCTGTTATTCTAGGTGTAATGTCACTCTCTAGGTTCCAGCAGCCTCTACCTAAGGCAGGGCTTTCCCACTGATGCTCCCCGGTTTGCCTTCCACCCTTCCACAGATTGCTCTGGCATCACCTGACCCCCAGTGTCTAGGGTAGCATCCCTTCACCCACGTTTTCTGTAGGCCACGACACTGAACACCTCTCCCTCTGCCTGCAG
Seq C2 exon
AAGTCGGAGACTTTCTCTCCTTAGACCTGGGAGGAACCAACTTCAGAGTGATGCTGGTCAAAGTGGGAGAGGGGGAGGCAGGGCAGTGGAGCGTGAAGACAAAACACCAGATGTACTCCATCCCCGAGGACGCCATGACGGGCACTGCCGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061527:ENSRNOT00000080147:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.589 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PU(3.9=15.8)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(44.7=100),PF0034916=Hexokinase_1=PU(2.4=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGATCCTGGCAGAGTT
R:
CATGGCGTCCTCGGGGAT
Band lengths:
246-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]