RnoEX6043187 @ rn6
Exon Skipping
Gene
ENSRNOG00000061527 | Gck
Description
glucokinase [Source:RGD Symbol;Acc:2670]
Coordinates
chr14:86158838-86164341:-
Coord C1 exon
chr14:86164216-86164341
Coord A exon
chr14:86159396-86159558
Coord C2 exon
chr14:86158838-86158992
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCCCCCCCGCACAGGTC
3' ss Score
10.75
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
CAGTCCTCACCTGCAACAGGTGGCCTCAGGAGTCAGGAACATCTCTACTTCCCCAACGACCCCTGGGTTGTCCTCTCAGAGATGGCTATGGATACTACAAGGTGTGGAGCCCAGTTGTTGACTCTG
Seq A exon
GTCGAGCAGATCCTGGCAGAGTTCCAGCTGCAGGAGGAAGACCTGAAGAAGGTGATGAGCCGGATGCAGAAGGAGATGGACCGTGGCCTGAGGCTGGAGACCCACGAGGAGGCCAGTGTAAAGATGTTACCCACCTACGTGCGTTCCACCCCAGAAGGCTCAG
Seq C2 exon
AAGTCGGAGACTTTCTCTCCTTAGACCTGGGAGGAACCAACTTCAGAGTGATGCTGGTCAAAGTGGGAGAGGGGGAGGCAGGGCAGTGGAGCGTGAAGACAAAACACCAGATGTACTCCATCCCCGAGGACGCCATGACGGGCACTGCCGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061527-'1-7,'1-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.359 C2=0.038
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PU(2.4=33.3)
A:
PF0034916=Hexokinase_1=FE(26.0=100)
C2:
PF0034916=Hexokinase_1=FE(44.7=100),PF0034916=Hexokinase_1=PU(2.4=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGTGGCCTCAGGAGTC
R:
GTCCTCGGGGATGGAGTACAT
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]