BtaEX6028500 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93678563-93681623:-
Coord C1 exon
chr4:93681547-93681623
Coord A exon
chr4:93678793-93678889
Coord C2 exon
chr4:93678563-93678645
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCTCAGTGTCTGTTCTGCAGGCA
3' ss Score
6.57
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GCTGCAGCCACAATGGTCAGGCCTATGGCAATGGGGAGACCTTCACCCCAGATGCCTGCACCATCTGCCGCTGCCTG
Seq A exon
GCAGGGACAGTGCGGTGCCAGGGGCCCTCATGCTCAGAGCTCAACTGCCTGGAGAGCTACACCCCACCTGGGGAGTGCTGCCCCGTCTGCCGGCCAG
Seq C2 exon
GCTGTGAGTATGAGGGGCAGCTTTACGAGGAAGGGGCCAACTTCTGGTCCAGCTCCAACCCTTGTCTCCAGTGCTCCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'4-7,'4-6,8-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(43.6=92.3)
A:
PF0009313=VWC=PD(52.7=87.9)
C2:
PF0009313=VWC=PU(45.6=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCCACAATGGTCAGG
R:
GAGCACTGGAGACAAGGGTTG
Band lengths:
152-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]