MmuEX0025201 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29502585-29504309:-
Coord C1 exon
chr6:29504233-29504309
Coord A exon
chr6:29502778-29502874
Coord C2 exon
chr6:29502585-29502667
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCTTGGTGTCTGCTCTGCAGGCA
3' ss Score
7.65
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GCTGCAGCCACAATGGGCAGTCTTATGGTCATGGGGAGACCTTCTCCCCAGATGCCTGTACCACCTGCCGCTGTCTG
Seq A exon
GCAGGAACCGTGCAGTGCCAGGGGCCTTCATGCTCTGAGCTTAACTGTCTGGAGAGCTTCATCCCTCCTGGAGAATGTTGCCCCATCTGCCGGCCAG
Seq C2 exon
GCTGTGAATATGAAGGGCAGCTTCACCAGGAAGGGTCTAGTTTCTTGTCCAGTTCCAACCCATGCCTCCAGTGCTCTTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(0.1=0.0),PF0009313=VWC=PU(82.8=92.3)
A:
PF0009313=VWC=PD(52.7=87.9)
C2:
PF0009313=VWC=PU(45.6=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCCACAATGGGCAG
R:
CAGGCAAGAGCACTGGAGG
Band lengths:
159-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types