RnoEX0046276 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56781539-56783136:-
Coord C1 exon
chr4:56783060-56783136
Coord A exon
chr4:56781729-56781825
Coord C2 exon
chr4:56781539-56781621
Length
97 bp
Sequences
Splice sites
3' ss Seq
GCTTGGTGTCTGCTCTGAAGGCA
3' ss Score
4.12
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GCTGCAGCCACAATGGGCAGTCTTATGGTCATGGGGAGACCTTCTCCCCAGATGCTTGTACCACCTGCCGCTGTCTG
Seq A exon
GCAGGAGCTGTGCAGTGCCAGGGGCCTTCCTGCTCTGAGCTCAACTGTCTGGAGAGCTTCACCCCGCCTGGAGAATGCTGCCCCATCTGCCGGCCAG
Seq C2 exon
GCTGTGAGTACGAGGGGCAGCTTCACCAGGAAGGGACCAGCTTCCTGTCCACTTCCAACCCATGCCTCCAGTGTTCTTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(43.6=92.3)
A:
PF0009313=VWC=PD(52.7=87.9)
C2:
PF0009313=VWC=PU(45.6=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCCACAATGGGCAG
R:
CAGGCAAGAACACTGGAGGC
Band lengths:
159-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]