HsaEX1018472 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128903164-128906363:-
Coord C1 exon
chr7:128906279-128906363
Coord A exon
chr7:128904293-128904380
Coord C2 exon
chr7:128903164-128903383
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCTCAGTGTCTGCCCTGCAGACA
3' ss Score
6.72
5' ss Seq
TCTGCCGGC
5' ss Score
-19.08
Exon sequences
Seq C1 exon
GAAGGTACCATCACTTGCAACCAGAAGCCATGCCCAAGAGGACCCTGCCCTGAGCCAGGAGCATGCTGCCCGCACTGTAAGCCAG
Seq A exon
ACAGGAGCCGTGCAGTGCCAGGGGCCCTCGTGTTCAGAGCTCAACTGCTTGGAGAGCTGCACCCCACCTGGGGAGTGCTGCCCCATCT
Seq C2 exon
CCAAGGGCAGGAATAGAAGCAGGCACCAGCTAGTGTGCGAATTCAGAGGAAGGAGACCGAATCCAGCCTGGGCACAGGAGGGAAAGCGTCCTGGAGGCAGCTGGTCCCCAGGTGGCCCTTAAGGATAAAGAAAAGTTAGCTTGGTGAAGGGCTGAGGAAGGCAGTGAGCCTTCTAGGAAGAGGGGAGAAATCAAGCACAGGCGTGGCCCTGACACGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253_MULTIEX1-2/6=1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.425
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(49.0=86.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000610776fB18051
Main Skipping Isoform:
ENST00000610776fB18052
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTGCAACCAGAAGCCAT
R:
CTGCCTCCAGGACGCTTTC
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains