BtaEX6028507 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93673151-93673619:-
Coord C1 exon
chr4:93673526-93673619
Coord A exon
chr4:93673321-93673400
Coord C2 exon
chr4:93673151-93673244
Length
80 bp
Sequences
Splice sites
3' ss Seq
CAGCACCGTCTTCCCAACAGGCT
3' ss Score
7.77
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GAAGGCCACATCCTGTGCCGCCAGCGGGAATGTGCCAGTCTGTGCCCATACCCTGCCCGGCCCCTCCCGGGCACCTGCTGCCCGGTGTGTGATG
Seq A exon
GCTGTTTCCTAAATGGGCGGGACTACCGCAGCGGGGAGCCCGTGGGCTCTGGGGACCCCTGCTCGCGCTGCCGTTGTGTC
Seq C2 exon
AATGGGAGTGTCCAGTGTGAGCCTCCACCCTGCCCACCCACGCCCTGCAGACACCCAGGCAGGACCCCGGGGGAGTGCTGCCCTGTCTGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
PF0009313=VWC=PU(44.6=92.6)
C2:
PF0009313=VWC=PD(51.8=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGGGAATGTGCCAGTC
R:
TGTCACAGACAGGGCAGCA
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]