MmuEX6003367 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29495758-29499218:-
Coord C1 exon
chr6:29499125-29499218
Coord A exon
chr6:29498957-29499036
Coord C2 exon
chr6:29495758-29495928
Length
80 bp
Sequences
Splice sites
3' ss Seq
TGAGCACCTTTCTCCCACAGGCT
3' ss Score
9.23
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GAGGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCCCTTCCGGGCACCTGTTGCCCGGTGTGTGACG
Seq A exon
GCTGTTTCCTAAATGGGCGGGAGCACAGCAGTGGGGAGCCCGTGGGCTCCCAGGACCCCTGCTCTAGCTGCCGCTGTACC
Seq C2 exon
GCTGCCTGTATCAGGGGAAGGAGTTTGCCAGTGGGGAGCGTTTTCCATCACCAAACGTTGCGTGCCACGTGTGCCTCTGCTGGGAGGGCAGCGTCAAGTGCGAGCCCAGGACTTGTGCCCCTGCACAGTGCCCCTTTCCCACCAGGGAAGACTGCTGCCCTGCCTGTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022_MULTIEX1-3/30=2-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
PF0009313=VWC=PU(44.6=92.6)
C2:
PF0009313=VWC=WD(100=94.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGCCTGTGTCCATAC
R:
AAGTCCTGGGCTCGCACTT
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types