HsaEX0033140 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128893806-128894293:-
Coord C1 exon
chr7:128894200-128894293
Coord A exon
chr7:128893976-128894055
Coord C2 exon
chr7:128893806-128893899
Length
80 bp
Sequences
Splice sites
3' ss Seq
AAGGCCCCCCTTCCCAACAGGCT
3' ss Score
8.07
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GAGGGTCACATCCAGTGCCGCCAGCGAGAATGTGCCAGCCTGTGTCCATACCCAGCCCGGCCCCTCCCAGGCACCTGCTGCCCTGTGTGTGATG
Seq A exon
GCTGTTTCCTAAACGGGCGGGAGCACCGCAGCGGGGAGCCTGTGGGCTCAGGGGACCCCTGCTCGCACTGCCGCTGTGCT
Seq C2 exon
AATGGGAGTGTCCAGTGTGAGCCTCTGCCCTGCCCGCCAGTGCCCTGCAGACACCCAGGCAAGATCCCTGGGCAGTGCTGCCCTGTCTGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(50.9=90.6)
A:
PF0009313=VWC=PU(44.6=92.6)
C2:
PF0009313=VWC=PD(51.8=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCCAGTGCCGCCAG
R:
AGCACTGCCCAGGGATCTT
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development