BtaEX6028834 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:102134019-102145128:-
Coord C1 exon
chr4:102145054-102145128
Coord A exon
chr4:102144590-102144646
Coord C2 exon
chr4:102134019-102134084
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTTAAATGACAGATT
3' ss Score
7.99
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AAATCAGCTCTCAGGAGGAAGTGTGCAGTCTGTAAGATTGTCGTCCATACCGCCTGCATTGAACAGCTAGAAAAG
Seq A exon
ATTAATTTCAGATGTAAACCAACATTTCGAGAAGGAGGTTCAAGATCACCAAGAGAA
Seq C2 exon
AACTTTGTGCGTCACCACTGGGTGCATAGGCGTCGGCAGGAAGGAAAGTGTAAGCAGTGCGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'7-8,'7-6,8-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.273
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(42.9=100)
A:
PF0013017=C1_1=PD(8.9=26.3)
C2:
PF0013017=C1_1=PU(28.3=77.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCAGGAGGAAGTGTGC
R:
CCGCACTGCTTACACTTTCCT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]