RnoEX6013163 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64618977-64629477:-
Coord C1 exon
chr4:64629403-64629477
Coord A exon
chr4:64628101-64628157
Coord C2 exon
chr4:64618977-64619042
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTCAAATGGCAGATT
3' ss Score
7.93
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
AAATCCGCTCTCAGGAGGAAGTGTGCTGTCTGCAAAATTGTGGTCCACACCGCCTGCATTGAGCAACTAGAGAAG
Seq A exon
ATTAATTTCAGATGTAAACCTACATTTCGGGAAGGAGGCTCCAGATCGCCAAGAGAA
Seq C2 exon
AACTTTGTGCGCCATCACTGGGTCCACAGGAGGCGGCAGGAGGGAAAATGTAAGCAGTGTGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'9-6,'9-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.223
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(42.9=100)
A:
PF0013017=C1_1=PD(8.9=26.3)
C2:
PF0013017=C1_1=PU(28.3=77.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCGCTCTCAGGAGGAAGT
R:
ACTGCTTACATTTTCCCTCCTGC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]