GgaEX1019497 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59604042-59608531:+
Coord C1 exon
chr1:59604042-59604116
Coord A exon
chr1:59606757-59606813
Coord C2 exon
chr1:59608466-59608531
Length
57 bp
Sequences
Splice sites
3' ss Seq
CAGCTTTATTTTAATGCCAGATT
3' ss Score
3.85
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AAATCTGCTCTGAGGAGGAAGTGTGCTGCCTGCAAGATTGTGGTCCACAACGCATGCATGGAGCAGTTAGAGAAG
Seq A exon
ATTAATTTTCGCTGCAAACCAACTTTCCGAGAAGGGAGCTCCAGGTCTCCAAGAGAA
Seq C2 exon
AACTTTGTCCGACATCACTGGGTACACAGACGGAGGCAGGAGGGGAAATGTAAGCAGTGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(42.9=100)
A:
PF0013017=C1_1=PD(8.9=26.3)
C2:
PF0013017=C1_1=PU(28.3=77.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGAGGAGGAAGTGTGCT
R:
TCCACACTGCTTACATTTCCCC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]