BtaEX6028958 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017793 | KLRG2
Description
killer cell lectin-like receptor subfamily G, member 2 [Source:HGNC Symbol;Acc:HGNC:24778]
Coordinates
chr4:103799775-103808888:-
Coord C1 exon
chr4:103808787-103808888
Coord A exon
chr4:103808245-103808390
Coord C2 exon
chr4:103799775-103799878
Length
146 bp
Sequences
Splice sites
3' ss Seq
GGTCTCCCTCTGTGCTGCAGGGA
3' ss Score
7.53
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGCTGCCCATGTACATGAGGTCCCTGCGCTGGGCCCTGGCAGTCATGGCCGTGCTCCTGGCGGTGTTGGCGGTGGCTGTTGTGGCCTTGGCCTCGAAAACAG
Seq A exon
GGATCAGATGCCGACCATGCCCCCAGGGCTGGATGTGGTCCGAGGGGCAGTGCTACTACCTCGCTGCCGAAGCCGAGGCCTGGGAGACCAGCCAGGCTTTCTGCTCAGCCCACCAGGCTACCCTACCCCTGCTGAGACACACCCAG
Seq C2 exon
GATTTCCTGAGCAGACACCCGGTCACCAGGTACTCCTGGGTGGGAGCCCGACGAGGCCCCCAGGGCTGGCACTGGATCGACGGGACCCCCCTGCCACCCCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017793-'1-5,'1-2,2-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(25.8=51.0)
C2:
PF0005916=Lectin_C=FE(35.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCCATGTACATGAGGTC
R:
GGGTCCCGTCGATCCAGTG
Band lengths:
189-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]