RnoEX6013229 @ rn6
Exon Skipping
Gene
ENSRNOG00000006814 | Klrg2
Description
killer cell lectin like receptor G2 [Source:RGD Symbol;Acc:1587495]
Coordinates
chr4:66371973-66376076:-
Coord C1 exon
chr4:66375975-66376076
Coord A exon
chr4:66375455-66375600
Coord C2 exon
chr4:66371973-66372076
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGACAAGTCTCTGCTTTCAGGAG
3' ss Score
6.65
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGCTGCCCCAGTACATGAAGTCTCTGCGCTGGGCTCTGGTGGTCATGGCTGTGTTGCTAGCAGTCTGCACTGTGGCGATTGTGGCACTGGCCTCTAGAGGCG
Seq A exon
GAGCCAAATGCCAACCGTGCCCTCAAGGCTGGATGTGGTCTCAGGAACACTGTTACTACCTCTCTGAAGAAGTCCAAGACTGGGAGAGCAGCCAAGCATTTTGCTCAGCCCACCAGGCCACACTGCCTCTGCTGAACCACACCCAG
Seq C2 exon
GACTTCTTAAGAAAATACCAGGTCACCAAGGGCTCCTGGGTGGGGGCCCGACGAGGCCCTGAAGGCTGGCACTGGACTGATGGGGTTCCCTTGCCATCCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006814-'1-4,'1-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(25.8=51.0)
C2:
PF0005916=Lectin_C=FE(35.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCCCAGTACATGAAGTC
R:
AGTTGGGATGGCAAGGGAAC
Band lengths:
205-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]