BtaEX6029076 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020453 | CLEC5A
Description
C-type lectin domain family 5, member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr4:106061238-106067011:-
Coord C1 exon
chr4:106066952-106067011
Coord A exon
chr4:106066502-106066638
Coord C2 exon
chr4:106061238-106061344
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTCGATTTCTGTAGTCT
3' ss Score
7.52
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
TCCCACAGATTTTGGGGAATGGCACTGTCAGCTTCACTCCAACAGAGAGCTACGGAACAG
Seq A exon
TCTGCCCCAAGGGGTGGGATTTTCATCAGGGAAGATGTTTTTTCTTGTCCAAATCGGAATCGTCTTGGAACAAGAGCATGAACTTTTGCAAGGAAAAAGGATCCACGTTGGCCATTGTCAACACGCCAGAGAAACTG
Seq C2 exon
AAATTTCTCCAGGACATAACTGGTGCTGAGAAGTATTTTATTGGCTTATTATACCAGCCTGTAGAGAAAACGTGGCACTGGATCAACAACGCTAAGTTTAACGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020453-'2-5,'2-2,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(27.6=58.7)
C2:
PF0005916=Lectin_C=FE(35.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATTTTGGGGAATGGCACT
R:
TGCCGTTAAACTTAGCGTTGT
Band lengths:
162-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]