MmuEX0011673 @ mm9
Exon Skipping
Gene
ENSMUSG00000029915 | Clec5a
Description
C-type lectin domain family 5, member a [Source:MGI Symbol;Acc:MGI:1345151]
Coordinates
chr6:40529372-40535247:-
Coord C1 exon
chr6:40535149-40535247
Coord A exon
chr6:40531799-40531935
Coord C2 exon
chr6:40529372-40529478
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCCCAATCTCTCCAGTCT
3' ss Score
7.16
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
ATCCCTGAATCCCCATCATCATGAACTGGCACATGATCATCTCGGGGCTTATCGTAGTAGTGATCAAAGTTGTTGGAATGACCTTTTTTCTGCTGTATT
Seq A exon
TCTGTCCCAGAAACTGGGATTTTCACCAAGGAAAATGCTTTTTCTTCTCCTTCTCCGAATCACCTTGGAAAGACAGCATGGATTATTGTGCAACACAAGGATCCACACTGGCAATTGTCAACACTCCAGAGAAACTG
Seq C2 exon
AAGTATCTTCAGGACATAGCTGGTATTGAGAATTACTTTATTGGTTTGGTACGTCAGCCTGGAGAGAAAAAGTGGCGCTGGATCAACAACTCTGTGTTCAATGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029915_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(27.6=58.7)
C2:
PF0005916=Lectin_C=FE(35.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGAATCCCCATCATCATGA
R:
TGCCATTGAACACAGAGTTGT
Band lengths:
204-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: