RnoEX6013283 @ rn6
Exon Skipping
Gene
ENSRNOG00000026306 | Clec5a
Description
C-type lectin domain containing 5A [Source:RGD Symbol;Acc:1584755]
Coordinates
chr4:68812933-68814503:-
Coord C1 exon
chr4:68814444-68814503
Coord A exon
chr4:68813979-68814115
Coord C2 exon
chr4:68812933-68813039
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTCCAATCTCTCCAGCCT
3' ss Score
6.49
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
TCTCACAGATTTTTGGAAGAAGTGATGAAAGCTTCGTTCCCACAAGGAGCTCTGGAACAG
Seq A exon
CCTGTCCCAACAACTGGGATTTTCACCAAGGAAGATGTTTTTTCTTCTCTACCTCTGAATCACCTTGGAAAAACAGCAGGGACTATTGTGCAACAAAAGGATCCACACTGGCAATTGTCGACACTCCAAAGAAACTG
Seq C2 exon
AAGTTTCTTCAGGACAGAGCTGGGGCTGAGAATTACTTTATTGGTTTGATACGTCAGCCTGGAGAGAAGAAATGGCGCTGGGTCAACAACTCTGTGTTCAAGGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026306-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(27.6=58.7)
C2:
PF0005916=Lectin_C=FE(35.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACAGATTTTTGGAAGAAGTGA
R:
TGCCCTTGAACACAGAGTTGT
Band lengths:
166-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]