HsaEX0000060 @ hg19
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr7:141631520-141646725:-
Coord C1 exon
chr7:141646607-141646725
Coord A exon
chr7:141635614-141635750
Coord C2 exon
chr7:141631520-141631626
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTTGGACCTCTTCAGTCT
3' ss Score
5.53
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTTGCTTGGGCAAAAGGAGCATATTCTCAGGAGACGGGGCCCCTGCCTGCCACACCAAGCATTAGGCCACCAGGAAGACCCCCATCTGCAAGCAAGCCTAGCCTTCCAGGGAGAAAGAG
Seq A exon
TCTGCCCCAAAGACTGGGAATTTTATCAAGCAAGATGTTTTTTCTTATCCACTTCTGAATCATCTTGGAATGAAAGCAGGGACTTTTGCAAAGGAAAAGGATCCACATTGGCAATTGTCAACACGCCAGAGAAACTG
Seq C2 exon
AAGTTTCTTCAGGACATAACTGATGCTGAGAAGTATTTTATTGGCTTAATTTACCATCGTGAAGAGAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258227_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show PDB structure
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0005916=Lectin_C=PU(33.8=58.7)
C2:
PF0005916=Lectin_C=FE(43.2=100),PF098274=CRISPR_Cas2=PU(47.2=94.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGGGCAAAAGGAGCATA
R:
TGCCATTGAACACAGAGTTGT
Band lengths:
223-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)