BtaEX6029908 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020705 | PRSS12
Description
Bos taurus protease, serine, 12 (neurotrypsin, motopsin) (PRSS12), mRNA. [Source:RefSeq mRNA;Acc:NM_001193222]
Coordinates
chr6:7968470-7978481:+
Coord C1 exon
chr6:7968470-7968620
Coord A exon
chr6:7975561-7975739
Coord C2 exon
chr6:7978340-7978481
Length
179 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTTATGTTTGTTCAGTGG
3' ss Score
6.96
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCCTGCGTTCCCCATCCTGCGCCTTGTTGGGGGCAGCAGTGTGCGTGAGGGCCGAGTGGAGGTCTACCATGCTGGTCAGTGGGGGACAGTCTGTGACGACCAGTGGGATGATGCAGATGCAGAAGTGGTCTGCAGGCAGCTGGGTCTGAG
Seq A exon
TGGCATTGCCAAAGCATGGAATCAGGCGTATTTTGGGGAAGGGTCTGGTCCAGTAATGTTGGATGAGGTACGCTGCACCGGGAATGAGCTTTCTATTGAGCAGTGTCCAAAGAGTTCCTGGGGAGAGCATAACTGTGACCATAAAGAAGATGCTGGAGTGTCCTGTACCCCTCTAACAG
Seq C2 exon
ATGGCGTCATCAGACTTGCAGGTGGTAAAGGCAGCCACGAGGGTCGCCTGGAGGTGTATCACAGAGGACAGTGGGGGACTGTCTGTAATGACGGCTGGACTGATCTTAATACCTATGTGGTTTGCCGACAGCTGGGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020705-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=80.4)
A:
PF0053013=SRCR=PD(57.1=91.8)
C2:
PF0053013=SRCR=PU(42.3=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGTGGAGGTCTACCAT
R:
TTAAATCCCAGCTGTCGGCAA
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]