RnoEX0070319 @ rn6
Exon Skipping
Gene
ENSRNOG00000015353 | Prss12
Description
serine protease 12 [Source:RGD Symbol;Acc:69238]
Coordinates
chr2:227675701-227689490:+
Coord C1 exon
chr2:227675701-227675851
Coord A exon
chr2:227687641-227687819
Coord C2 exon
chr2:227689349-227689490
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTATGCTTATTCAGTGG
3' ss Score
7.09
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCCCCGCGCTGCCTGTCATTCGCCTTGTTGGTGGGAAGAGTGGGCACGAAGGTCGAGTGGAGCTGTACCACGCTGGCCAATGGGGAACCATCTGTGATGACCAATGGGACGACGCAGATGCAGAAGTCATCTGCAGGCAGCTGGGTCTCAG
Seq A exon
TGGCATTGCCAAAGCATGGCATCAGGCACATTTTGGGGAAGGATCTGGCCCAATATTGTTGGATGAAGTACGCTGCACTGGGAATGAGCTGTCAATTGAGCAGTGTCCAAAGAGCTCCTGGGGTGAACATAACTGTGGCCATAAAGAAGATGCCGGAGTGTCTTGTGCTCCTCTGACAG
Seq C2 exon
ATGGTGTCATCAGACTGTCAGGAGGGAAAAGTGTCCATGAAGGTCGCTTGGAGGTGTACTATAGGGGACAGTGGGGAACAGTTTGTGATGATGGCTGGACTGAAATGAATACATACGTGGCTTGTCGACTGCTGGGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015353-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=80.4)
A:
PF0053013=SRCR=PD(57.1=91.8)
C2:
PF0053013=SRCR=PU(42.3=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGTGGGCACGAAGGTC
R:
AAATCCCAGCAGTCGACAAGC
Band lengths:
257-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]