GgaEX1046472 @ galGal3
Exon Skipping
Gene
ENSGALG00000012004 | F1NH25_CHICK
Description
NA
Coordinates
chr4:56581685-56586952:+
Coord C1 exon
chr4:56581685-56581835
Coord A exon
chr4:56586010-56586188
Coord C2 exon
chr4:56586811-56586952
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTACCTTTTGACAGGGG
3' ss Score
7.09
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
CCTCTGTCTTTACTCCGATCCGGCTGGCTGGTGGGAACAAGGCTTATGAAGGAAGAGTAGAAGTCTACCATGCTGGCCAGTGGGGGACTATCTGTGATGATCAGTGGGATGACGCAGATGCTGAAGTTGTCTGCCGGCAGCTTGGCCTTGG
Seq A exon
GGGTGCTGCCAAGGCATGGAGCCAGGCTTACTTTGGAGAAGGCTCAGGCCCTGTGCTGCTGGATGAAGTGCAGTGTACAGGAAATGAGCTATCTATAGAACAGTGTCCAAAAAGCTCTTGGAGAGAACATAACTGCGACCACAAAGAAGATGCTGGTGTTTCCTGTACACCTCTCACAG
Seq C2 exon
ATGGTGCATTAAGGCTAACAAGTGGGAAAGGCAGTCATGAGGGACGCCTGGAGGTCTATTATTCTGGGCAGTGGGGCACAATCTGCGATGATGGGTGGACAGAGCTGAATACACAGGTGGCTTGCCGGCAGCTGGGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012004-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PU(41.8=80.4)
A:
PF0053013=SRCR=PD(57.1=91.8)
C2:
PF0053013=SRCR=PU(42.3=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGGGAACAAGGCTTAT
R:
GGCAAGCCACCTGTGTATTCA
Band lengths:
251-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]