BtaEX6030124 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017282 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr6:17562230-17587483:+
Coord C1 exon
chr6:17562230-17562256
Coord A exon
chr6:17564683-17564727
Coord C2 exon
chr6:17587430-17587483
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTAATCATATGTCTCCTTAGGGT
3' ss Score
10.69
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTCCTCTGGGACCTCCAGGACAAAAG
Seq A exon
GGTTCTGTTGGAGTGCCTGGAATTCCAGGGATGAATGGACAAAAG
Seq C2 exon
GGTGAACCCGGGTTGCCTGGAGCAGTAGGACAGAATGGAATACCAGGGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017282-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(10.5=100)
A:
PF0139113=Collagen=FE(18.4=100)
C2:
PF0139113=Collagen=PD(8.5=38.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACCTCCAGGACAAAAG
R:
GCCCTGGTATTCCATTCTGTCC
Band lengths:
69-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]