GgaEX7003788 @ galGal4
Exon Skipping
Gene
ENSGALG00000010521 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr4:37025022-37037520:+
Coord C1 exon
chr4:37025022-37025048
Coord A exon
chr4:37027777-37027821
Coord C2 exon
chr4:37037467-37037520
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGGTGTCTCTTTCCCACCAGGGT
3' ss Score
10.43
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGACCTCAAGGGCCTCCAGGACAAAAG
Seq A exon
GGTTCTGTTGGAGTGCCTGGTGTTCCTGGGAAAGATGGACAAATG
Seq C2 exon
GGAGAACCTGGTTTGCCTGGCATAGCAGGGGAGAAGGGAGCAGCGGGGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010521-'15-12,'15-11,16-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(12.9=100),PF0139113=Collagen=FE(10.1=100)
A:
PF0139113=Collagen=PD(4.8=20.0),PF0139113=Collagen=FE(16.5=100)
C2:
PF0139113=Collagen=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAGGGCCTCCAGGAC
R:
CTTAAGCCCCGCTGCTCC
Band lengths:
78-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]