BtaEX6030751 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002299 | SEL1L3
Description
Bos taurus sel-1 suppressor of lin-12-like 3 (C. elegans) (SEL1L3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206556]
Coordinates
chr6:46865819-46868434:-
Coord C1 exon
chr6:46868308-46868434
Coord A exon
chr6:46866289-46866410
Coord C2 exon
chr6:46865819-46865934
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTCACTCTTGCAGGTT
3' ss Score
12.32
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATGTGGTTACCCTCCTGGAATTTCTCTATGCCTCCAGTGGAGAAAACACAGGCATTGTGAAGAAGTTCCTGAGATTTCAGAATCGAGAGCTGGAGGCCACTCGACGCCAGCGGATAGATTACCCAGT
Seq A exon
GTTTACTGTTTCACTGTGGCTTTATTTACTCCATTATTGCAAGGCCAATCTCTGTGGGATTCTGTACTTTGTTGATTCTAATGAGATGTACGGCACACCTTCTATATTTCTTACTGAAGAGG
Seq C2 exon
GCTACTTGCATATTCAAATGCATCTTGTCAAAGGAGAAGACCTTGCTGTAAAAACGAAATTCACCATACCTTTGAAGGAGTGGTTTCGCCTGGATATCTCTTTTAATGGCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002299-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000002970fB6223
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTTACCCTCCTGGAATT
R:
CTGGCCGCCATTAAAAGAGAT
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]