RnoEX0079210 @ rn6
Exon Skipping
Gene
ENSRNOG00000004932 | Sel1l3
Description
SEL1L family member 3 [Source:RGD Symbol;Acc:1562860]
Coordinates
chr14:60147907-60151251:+
Coord C1 exon
chr14:60147907-60148033
Coord A exon
chr14:60149994-60150115
Coord C2 exon
chr14:60151136-60151251
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCTCCCTCCTTTAGGGT
3' ss Score
12.92
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
ATGCAGTTCCCCTCCTCAGCTTTCCCTATGCTTCCAGTGGAGAAAACACAGGCATCGTAAAGAAGCTCCCAAAGTTCCAGAACCGAGAACTAGAGGCCACCCGAAGCCAGCGCGTGGACTACCCCAT
Seq A exon
GGTCACCATTTCACTGTGGCTTTATTTACTCCATTATTGCGAGGCCAGCCTCTGTGGAATTCTGTACTTTGTTGATTCTAATGAGATGTACGGCACGCCTTCTGTTTTTCTTACGGAAGACG
Seq C2 exon
GCAGTTTGCATATTCAAATGCATCTCATCAAAGGAGAAGACCTGGCTGTAAAAACAAAATTCACCCTCCCTTTGAAGGAGTGGTGCCGACTGGACATCTCTTTCAATGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004932-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGTTCCCCTCCTCAGC
R:
TGGCCTCCATTGAAAGAGATGT
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]