GgaEX0021111 @ galGal3
Exon Skipping
Gene
ENSGALG00000014370 | SEL1L3
Description
NA
Coordinates
chr4:75832253-75837786:+
Coord C1 exon
chr4:75832253-75832379
Coord A exon
chr4:75835844-75835965
Coord C2 exon
chr4:75837671-75837786
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTCCCTCATGCAGGTT
3' ss Score
10.49
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGGCGTTCAGATTCTCAACTTCATATATGCTTCCAGTGGGGAGAAGACAGGAATTGTGAAGAGATTTGAACAATTTGAAAACAGAGAACTTGAAACAGTCAGACAACATCAGATTGATTATCCAAT
Seq A exon
GTTCACTGTTTCAATCTGGCTATATTTACTGCATCACTGTGAAAAGGATCTGTGTGGTATACTCTATTTTATTGATCCAAAAGAGATGTATAGTACTCCTGCTATATTTCTAAATGAGGAAG
Seq C2 exon
GTTATGTGCATATTCAGATGCACCTCATTAGGGGAGATGACCTTGCAGTGAAAACAAGCTTCAGCCTTCCTCTGAAGCAGTGGTTTCGACTGGATCTCTCTTTTAAGGGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014370-'1-6,'1-5,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGTTCAGATTCTCAACTTCA
R:
CTGTCCACCCTTAAAAGAGAGATCC
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]