BtaEX6031004 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63048047-63052234:-
Coord C1 exon
chr6:63052107-63052234
Coord A exon
chr6:63049891-63049968
Coord C2 exon
chr6:63048047-63048135
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTTTTCTTTTAAGGAT
3' ss Score
11.85
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATGGTGGTGCTAATAATTTTGGACTGAATTTCTTGACGTTCATCATCCTTTTCAATAACCTCATTCCTATCAGCTTGCTGGTGACATTAGAAGTGGTGAAATTTACCCAGGCATACTTCATAAATTGG
Seq A exon
GATCTTGACATGCACTATGAACCAACTGACACTGCTGCTATGGCTCGAACATCTAATCTGAATGAGGAACTTGGCCAG
Seq C2 exon
GTGAAATATATATTTTCTGACAAAACTGGTACTTTGACATGCAATGTAATGCAGTTTAAGAAGTGCACCATAGCCGGAGTGGCTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PD(15.1=95.3)
A:
NO
C2:
PF127102=HAD=PU(6.7=86.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGACGTTCATCATCCTTTTCA
R:
TCCGGCTATGGTGCACTTCTT
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]