MmuEX0006931 @ mm9
Exon Skipping
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68152353-68156230:-
Coord C1 exon
chr5:68156103-68156230
Coord A exon
chr5:68153755-68153832
Coord C2 exon
chr5:68152353-68152441
Length
78 bp
Sequences
Splice sites
3' ss Seq
TGTCACTTGCTTCTTTGTAGGAT
3' ss Score
10.01
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATGGTGGCGCTAGTAACTTTGGACTGAACTTCCTGACTTTCATTATCCTTTTCAACAACCTCATTCCCATCAGCTTGCTGGTCACATTAGAAGTGGTGAAGTTTACTCAGGCATACTTCATAAATTGG
Seq A exon
GATCTTGACATGCATTATGAGCCCACAGACACCGCAGCAATGGCTCGGACATCTAATCTGAATGAGGAACTTGGCCAG
Seq C2 exon
GTTAAATACATATTTTCTGACAAAACTGGGACCCTGACATGCAATGTGATGCAGTTCAAGAAGTGCACCATCGCGGGCGTGGCCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-'20-19,'20-18,21-19
Average complexity
ME(18_21-18_23[100=99])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PD(15.1=95.3)
A:
NO
C2:
PF127102=HAD=PU(40.6=86.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGCGCTAGTAACTTTGG
R:
GCATGTCAGGGTCCCAGTTTT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: