GgaEX6035632 @ galGal4
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67789753-67792400:+
Coord C1 exon
chr4:67789753-67789880
Coord A exon
chr4:67791516-67791593
Coord C2 exon
chr4:67792312-67792400
Length
78 bp
Sequences
Splice sites
3' ss Seq
CGCTTTCATTTTTCCTGTAGGAC
3' ss Score
10.8
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
ATGGTGGAGCAAGCAACTTCGGTTTAAACTTCTTGACTTTTATCATTCTCTTCAATAATCTAATTCCTATCAGTTTGTTGGTTACACTTGAAGTTGTTAAATTTATCCAAGCATATTTCATAAATTGG
Seq A exon
GACATAGACATGCATTATGAACCTACTGACACTGCTGCAATGGCTCGTACTTCCAACCTCAATGAGGAACTTGGACAG
Seq C2 exon
GTCAAATACATATTTTCTGATAAAACGGGTACTCTGACATGCAACGTCATGCAGTTTAAAAAATGTACTGTGGCAGGAGTTGCTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'20-21,'20-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PD(15.1=95.3)
A:
NO
C2:
PF127102=HAD=PU(6.4=86.7)
Main Skipping Isoform:
ENSGALT00000023022fB5301
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAAGCAACTTCGGTTT
R:
CGTTGCATGTCAGAGTACCCG
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]