BtaEX6031007 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63018110-63022775:-
Coord C1 exon
chr6:63022726-63022775
Coord A exon
chr6:63020838-63020907
Coord C2 exon
chr6:63018110-63018194
Length
70 bp
Sequences
Splice sites
3' ss Seq
GTGGAAAACCTTTCTTTCAGCGC
3' ss Score
4.76
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
CTGGGGCAGGAAGAAAGATATGAATTGCTCAATGTCTTGGAGTTCACCAG
Seq A exon
CGCTAGAAAAAGAATGTCAGTGATCGTTCGCACTCCATCCGGGAAGTTACGACTTTACTGCAAAGGAGCC
Seq C2 exon
GACACTGTAATTTATGACCGACTGGCAGAAACTTCAAAATACAAAGAAATTACCCTAAAACATTTGGAGCAGTTTGCTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'23-26,'23-25,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(4.1=100)
A:
PF127102=HAD=FE(5.9=100)
C2:
PF127102=HAD=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGCAGGAAGAAAGATATGA
R:
GCAAACTGCTCCAAATGTTTTAGG
Band lengths:
127-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]