GgaEX6035629 @ galGal3
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70090682-70096740:+
Coord C1 exon
chr4:70090682-70090731
Coord A exon
chr4:70095573-70095642
Coord C2 exon
chr4:70096656-70096740
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGCACTTATTTCTCTTTCAGCTC
3' ss Score
10.72
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TTGGGACATGAAGAAAGATATGAACTGCTAAATGTGCTAGAATTTACAAG
Seq A exon
CTCTAGGAAGAGAATGTCAGTGATTGTTCGCACGCCAACAGGAAAGTTAAGGCTCTACTGCAAAGGAGCT
Seq C2 exon
GATACTGTAATTTATGACCGCCTTGCTGAAAGTTCAAAATACAAAGAAATCACCTTAAAACATTTAGAGCAGTTTGCTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'20-24,'20-23,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(4.1=100)
A:
PF127102=HAD=FE(5.9=100)
C2:
PF127102=HAD=FE(7.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGACATGAAGAAAGATATGAACT
R:
GCAAACTGCTCTAAATGTTTTAAGGT
Band lengths:
127-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]