DreEX6094855 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21297631-21300210:-
Coord C1 exon
chr24:21300161-21300210
Coord A exon
chr24:21300003-21300072
Coord C2 exon
chr24:21297631-21297715
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTTTTTTGCAGCAA
3' ss Score
10.88
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AGAGGAAAAGAGCAGACATATGAGCTTCTTAATGTACTGGAGTTTTCCAG
Seq A exon
CAATCGCAAGCGGATGTCAGTGATTGTCAGAACACCTACAGGCAATCTTCGACTTTATTGCAAGGGAGCG
Seq C2 exon
GACAATGTGATTTTTGAGCGTCTAAATGTGACGTCACAGTATAAGGAGTTGACCGTGGCTCATCTGGAGCAGTTTGCCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-'26-24,'26-23,27-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(3.9=100)
A:
PF127102=HAD=FE(5.7=100)
C2:
PF127102=HAD=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAAAGAGCAGACATATGAGC
R:
CTTCTGTGGCAAACTGCTCCA
Band lengths:
135-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]