RnoEX0013437 @ rn6
Exon Skipping
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40317608-40322651:-
Coord C1 exon
chr15:40322602-40322651
Coord A exon
chr15:40320056-40320125
Coord C2 exon
chr15:40317608-40317692
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTATACTATTACAGCGA
3' ss Score
8.28
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGGGACAAGAACAGACATTCGGGATCCTCAATGTTCTAGAATTTTCTAG
Seq A exon
CGACAGAAAAAGAATGTCTGTCATTGTTCGAATGCCGTCGGGACAACTTCGACTTTACTGCAAGGGAGCT
Seq C2 exon
GATAATGTAATCTTTGAAAGACTTTCAAAAGACTCAAAGTACATGGAGGAGACATTATGCCATCTGGAATATTTTGCCACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053-'33-28,'33-27,35-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132461=Hydrolase_like2=FE(16.0=100),PF0070221=Hydrolase=FE(6.2=100)
A:
PF132461=Hydrolase_like2=FE(23.0=100),PF0070221=Hydrolase=FE(9.0=100)
C2:
PF132461=Hydrolase_like2=PD(9.0=31.0),PF0070221=Hydrolase=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAAGAACAGACATTCGGG
R:
GTGGCAAAATATTCCAGATGGCA
Band lengths:
128-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]