GgaEX7001293 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176052032-176055415:+
Coord C1 exon
chr1:176052032-176052081
Coord A exon
chr1:176053555-176053624
Coord C2 exon
chr1:176055331-176055415
Length
70 bp
Sequences
Splice sites
3' ss Seq
AAATGTTTTTCTTTCAATAGTAA
3' ss Score
5.6
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CTGGGAAAAGAAAAGACCTTTGAAATTCTTAATGTTCTGGAATTTTCCAG
Seq A exon
TAACAGGAAGAGAATGTCTGTGATTGTTCGAACTCCAGCAGGACAACTACGTCTCTACTGCAAAGGAGCT
Seq C2 exon
GATAATGTAATTTTTGAGAGGCTTTCGAAAGATTCCCAGTATATGGAGCAAACACTGTGCCATCTTGAGTACTTCGCTACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132461=Hydrolase_like2=FE(16.0=100)
A:
PF132461=Hydrolase_like2=FE(23.0=100)
C2:
PF132461=Hydrolase_like2=PD(9.0=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAAAAGAAAAGACCTTTGA
R:
CTTCTGTAGCGAAGTACTCAAGATGG
Band lengths:
135-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]