MmuEX6041890 @ mm9
Exon Skipping
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60628640-60634760:-
Coord C1 exon
chr14:60634711-60634760
Coord A exon
chr14:60631216-60631285
Coord C2 exon
chr14:60628640-60628724
Length
70 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCTATACTATTACAGTGA
3' ss Score
7.37
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
ATGGGACAAGAACAGACATTCGGGATCCTCAATGTTCTAGAATTTTCTAG
Seq A exon
TGACAGGAAAAGAATGTCTGTCATTGTCCGACTGCCATCAGGACAACTTCGACTCTACTGCAAGGGAGCC
Seq C2 exon
GATAACGTCATCTTTGAAAGACTCTCAAAGGACTCAAAGTACATGGAGGAGACGCTATGCCATCTGGAATATTTTGCCACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(3.9=100)
A:
PF127102=HAD=FE(5.7=100)
C2:
PF127102=HAD=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAAGAACAGACATTCGGG
R:
GTGGCAAAATATTCCAGATGGCA
Band lengths:
128-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: